SELECT PUBLICATIONS
Thomson TM, Benjamin KR, Bush A, Love T, Pincus D, Resnekov O, Yu RC, Gordon A, Colman-Lerner A, Endy D and Brent R. (2011) Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range. Proc Natl Acad Sci U S A. Dec 13;108(50):20265-70. Epub 2011 Nov 23.
Pincus D, Benjamin K, Burbulis I, Tsong AE and Resnekov O. (2010) Reagents for investigating MAPK signalling in model yeast species. Yeast. 2010 Jul;27(7):423-30.
Andrews SS, Addy NJ, Brent R and Arkin AP. (2010) Detailed simulations of cell biology with Smoldyn 2.1. PLoS Comput Biol. Mar 12;6(3):e1000705.
Andrews SS. (2009) Accurate particle-based simulation of adsorption, desorption and partial transmission. Phys Biol. 2009 Nov 12;6(4):046015.
Yu, R.C., Pesce, C.G., Colman-Lerner, A., Lok, L.,Pincus, D., Serra, E., Holl, M., Benjamin, K., Gordon, A., and Brent , R. (2008) feedback that improves information transmission in yeast signalling. Nature 456: 755-761.
Yu RC, Resnekov O, Abola AP, Andrews SS, Benjamin KR, Bruck J, Burbulis IE, Colman-Lerner A, Endy D, Gordon A, Holl M, Lok L, Pesce CG, Serra E, Smith RD, Thomson TM, Tsong AE and Brent R. (2008) The Alpha Project: a model system for systems biology research. IET Syst Biol. 2008 Sep;2(5):222-33. Review.
Burbulis, I., Yamaguchi, K., Yu, R., Resnekov O., and Brent, R. (2007) Quantifying small numbers of molecules with a "near-universal" protein-DNA chimera. Nat Methods, 12:1011-3.
Gordon A, Colman-Lerner A, Chin TE, Benjamin KR, Yu, R.C., Brent R: (2007) Single-cell quantification of molecules and rates using open-source microscope-based cytometry. Nat Methods.
Burbulis I, Yamaguchi K, Gordon A, Carlson R, Brent R: (2005) Using protein-DNA chimeras to detect and count small numbers of molecules. Nat Methods, 2:31-37.
Colman-Lerner A, Gordon A, Serra E, Chin T, Resnekov O, Endy D, Pesce CG, Brent R (2005) Regulated cell-to-cell variation in a cell-fate decision system. Nature, 437:699-706.
Lok L, Brent R: (2005) Automatic generation of cellular reaction networks with Moleculizer 1.0. Nat Biotechnol, 23:131-136.
Lok L: (2004) The need for speed in stochastic simulation. Nat Biotechnol, 22:964-965.
Lok L: (2002) Pathfinder and other tools for analyzing signal transduction networks. Ann N Y Acad Sci, 971:589-594.
Burbulis IE, Winkel-Shirley B: (1999) Interactions among enzymes of the Arabidopsis flavonoid biosynthetic pathway. Proc Natl Acad Sci U S A, 96:12929-12934.
Webb CD, Resnekov O: (1999) Use of green fluorescent protein for visualization for cell-specific gene expression and subcellular protein localization in Bacillus subtilis. Methods Enzymol, 302:136-153.
[ back to top ] |